BiotextUtils/alignment-example.fasta at master · Maximato/BiotextUtils · GitHub

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>seq1
--ARASVLSGGKLDAWEKIRLRPGGRKKYRMKHLVWASRELEKYSINPGLLETSEGCKQI
IRQLHSALPVGTEELKSLYNTIAVLYYVHQKIEVKDTKEALDKLEEEQNKYKQKTQQ---
AAAATGNSS--------SQNYPIVQNAQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPM
FSALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRVHPVHAGPIPPGQMREP
RGSDIAGTTSTLQEQIGWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKE
PFRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILRALGPAATLEEMMTACQ
GVGGPGHKARVLAEAMSQIHST-NQNVMMQRGNFR-GPKR-IKCFNCGKEGHLARNCRAP
RKKGCWKCGKEGHQMKDCTERQANFLGKIWPPNKGRPGNFPQSRT-----------EPTA
PPA-ENVGMGEE-IASSSKQE-LRNR--EQHTPTISLRSLFGNDPLSQ
>seq2
MGARASVLSGGKLEAWEKIRLRPGGKKKYRLKHLVWASRELEKFSINPSLLETETGCRRI
FGQLQPALETGTEELRSLYNTIAVLYFVHQKIEVKDTKEALDKIEEEQNKCKQKTQQ---
AAADTGSSSSQNYRGSSSQNYPIVQNAQGQMVHQAVSPRTLNAWVKVVEEKAFSPEVIPM
FTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVQAGPIPPGQMREP
RGSDIAGATSNLQEQIGWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIKQGPKE
PFRDYVDRFFKTLRAEQATQEVKNWMTDTLLVQNANPDCKSILRALGPGATLEEMMTACQ
GVGGPGHKARVLAEAMSQVQN---TNIMIQRGNFK-GQKR-IKCFNCGKEGHLARNCRAP
RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSNKGRPGNFPQSRT-----------EPTA
PP------MEEE-ITSSLKQ---ENR--EPSTPAISLKSLFGNDLLSQ
>seq3
MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELEKFSINPGLLETPEGCRQI
IRQLQPALQTGTEELKSLYNTVVVLYWVHQRVDVKDTKEALDKIEEEQN--KQKTQH---
AAADTGN--------SSSQNYPIVQNAQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPM
FTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRVHPVHAGPIPPGQMREP
RGSDIAGTTSTLQEQIGWMTSDPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKE
PFRDYVDRFFKTLRAEQATQEVKNWMTDTLLVQNANPDCRSILRALGPGASLEEMMTACQ
GVGGPSHKARVLAEAMSHVQST-NTNIMMQRGNFR-GQKR-IKCFNCGKEGHLARNCRAP
RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSNKGRPGNFPQSRT-----------EPTA
PPA-ENLRMGEE-ITSSLKQE-LETR--EPYNPAISLKSLFGNDPLLQ
>seq4
MGARASILSGGRLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPXLLESAEGCQQI
MEQLQPALKTGXEEIKSLFNTVATLYCVHQRIDVKDTKEALDKIEEIKNKSKQRTQQ---
AAADTGNSG------KVSQNYPIVQNAQGQMIHQNLSPRTLNAWVKVIEEKAFSPEVIPM
FSALSEGATPQDLNVMLNIVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPIPPGQIREP
RGSDIAGATSTPQEQLQWMTGNPPIPVGDIYKRWIILGLNKIVRMYSPTSILDIRQGPKE
SFRDYVDRFFKALRAEQATQEVKSWMTETLLVQNANPDCKSILKALGSGATLEEMMTACQ
GVGGPSHKARVLAEAMSQAQQ---TSIMMQRGNFRGGQKR-IKCFNCGKEGHLARNCRAP
RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSSKGRPGNFPQSRP-----------EPTA
PPA-ELFGMGEE-ITSPPKQE-QKDK--EQVPPLVSLKSLFGNDPSSQ
>seq5
MGARASVLSGGKLDAWEKIRLRPGGKKKYRMKHLVWASRELERFALNPGLLETTEGCQKI
IEQLQPSVKTGTEELKSLFNTVATLYCVHQRIDVKDTKEALDKIEEMQNKSKQKTQQ---
AAADIGNSS------KVSQNYPIVQNAQGQMIYQSMSPRTLNAWVKVIEEKGFNPEVIPM
FSALSEGATPQDLNMMLNIVGGHQAAMQMLKDTINEEAADWDRLHPVQAGPIPPGQMREP
RGSDIAGTTSTPQEQIGWMTSNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDVKQGPKE
PFRDYVDRFFKILRAEQATQDVKHWMTETLLIQNANPDCKSILRALGTGATLEEMMTACQ
GVGGPSHKARVLAEAMSQVQH---PNIMMQRGNFR-GQKR-IKCFNCGKEGHLARNCRAP
RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSSKGRPGNFPQSRP-----------EPSA
PPA-EIFGIGEE-IASPPKQE-QKDR--EPAQPLVSLKSLFGNDPLSQ
>seq6
MGARASVLSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFALNPSLLETTEGCQQI
MEQLQSALRTGTEELRSLYNTVATLYCVHQRIEVKDTKEALDKIEEIQKKSKQKTQQ---
AAADTGSSS------KVSQNYPIVQNAQGQMIHQSLSPRTLNAWVKVIEEKAFSPEVIPM
FSALSEGATPQDLNMMLNIVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPVAPGQMREP
RGSDIAGTTSTPQEQIAWMTGNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIKQGPKE
PFRDYVDRFFKTLRAEQATQEVKGWMTETLLIQNANPDCKSILRALGAGATLEEMMTACQ
GVGGPGHKARVLAEAMSQVQH---TNIMMQRGNFK-GQKR-IKCFNCGKEGHLAKNCRAP
RKKGCWKCGREGHQMKDCTERQANFLGKIWPSSKGRPGNFPQSRP-----------EPTA
PPAAEIFGMREE-IVSPPKQE-QNDR--DQNPPSVSLKSLFGNDLLSQ
>seq7
MGARASVLSGGKLDAWEKIRLRPGGKKRYRMKHLVWASRELDRFALNPGLLETAEGCQKI
MAQLQPALQTGTEEIKSLFNTVATLYCVHQKIEVRDTKEALEEVEKIQKKSQQK------
----ENSSS------QVSQNYPIVQNAQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPM
FTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINDEAAEWDRLHPQQAGPIAPGQIRDP
TGSDIAGATSTLQEQIRWMTSNPPVPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKE
PFRDYVDRFFKTLRAEQATQEVKSWMTDTLLIQNANPDCKIILKGLGQGATLEEMMTACQ
GVGGPSHKARVLAEAMSQASGA-AAAIMMQKSNFK-GPRRTIKCFNCGKEGHLARNCRAP
RKKGCWKCGKEGHQMKECTERQANFLGKIWPSNKGRPGNFLQNRP-----------EPTA
PPA-ENFGFGEE-IAPSPKQE-QKEK--ELY-PLSSLKSLFGNDQ---
>seq8
MGARASXLSGGKLDAWEKIRLTPGGKKKYRLKHLVWASREMERFALNPGLLETAEGCQQI
MSQLQPAIXTGTEEIKSLFNTVATLYCVHPKIEVKDTKEALEEVEKIQKKSQQKIQQ---
AARDEGNSS------QVSQNYPIVQNAQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPM
FSALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRIHPPQAGPIPPGQIREP
RGSDIAGTTSNLQEQIRWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKE
PFRDYVDRFFKTLRAEQATQEVKGWMTDTLLVQNANPDCKTILRALGPGATLEEMMTACQ
GVGGPGHKARVLAEAMSQATGA-AAAIMMQKSNFK-GPKRNIKCFNCGKEGHLARNCRAP
RKKGCWKCGKEGHQMKDCTERQANF-----------------------------------
------------------------------------------------
>seq9
MGARASVLSGGKLDAWEKIRLRPGGKKKYRMKHLVWASRELEKFALNPDLLETAEGCQQI
MRQLQPALQTGTEELRSLFNTVATLYCVHQRIEVKDTKEALEEVEKTQKKSQKQ-QQ---
AAMDEGNSS------QVSQNYPIVQNAQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPM
FSALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRIHPQQAGPIPPGQIREP
RGSDIAGTTSTLQEQIRWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKE
PFRDYVDRFFKTLRAEQATQEVKGWMTDTLLVQNANPDCKTILRALGPGASLEEMMTACQ
GVGGPSHKARVLAEAMSQASG---ATIMMQKSNFK-GPKRMIKCFNCGKEGHLARNCRAP
RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSNKGRPGNFLQNRP-----------EPTA
PPA-ESFGFGEE-IAPSPKQE-PKDK--ELY-PLTSLKSLFGSDP---
>seq10
--ARASVLSGGKLDDWEKIRLRPGGKKKYRLKHIVWASKELERFALNPGLLETTEGCKQI
IGQLQSSLQTGSEEIKSLYNTVAVLYYVHQKIQIRDTKEALDKLQEEQDKYQQKTQP---
AAAD----K------GVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPM
FSALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVQAGPIPPGQIREP
RGSDIAGTTSTLQEQIAWMTSNPPVPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKE
PFRDYVDRFFKTLRAEQATQEVKGWMTDTLLVQNANPDCKTILKALGPGATLEEMMTACQ
GVGGPGHKARILAEAMSQVTA---TSVLMQKSNFK-GQKRIVKCFNCGKEGHIAKNCRAP
RKRGCWKCGKEGHQMKDCTERQANFLGKIWPSNKGRPGNFIQSRP-----------EPTA
PPA-EGFGFGEE-ITPSPKQE-QKDK--GLYPPLTSLKSLFGNDP---