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Add Miniforge3 to GHA, drop Windows from CI matrix #8

Add Miniforge3 to GHA, drop Windows from CI matrix

Add Miniforge3 to GHA, drop Windows from CI matrix #8

Triggered via push March 14, 2026 00:45
Status Failure
Total duration 14m 56s
Artifacts 2

rworkflows.yml

on: push
Matrix: rworkflows
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19 errors and 9 warnings
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to report stat collector result
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to finish stat collector
ubuntu-latest (auto)
Process completed with exit code 1.
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getLineGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Network I/O Read (MB)"},"timeTicks":{"unit":"auto"}},"lines":[{"label":"Read","color":"#be4d25","points":[{"x":1773449138220,"y":0},{"x":1773449143233,"y":68},{"x":1773449148216,"y":0},{"x":1773449153216,"y":0},{"x":1773449158218,"y":0},{"x":1773449163218,"y":299},{"x":1773449168216,"y":0},{"x":1773449173217,"y":6},{"x":1773449178223,"y":63},{"x":1773449183216,"y":0},{"x":1773449188218,"y":0},{"x":1773449193217,"y":0},{"x":1773449198216,"y":0},{"x":1773449203220,"y":101},{"x":1773449208218,"y":4},{"x":1773449213219,"y":19},{"x":1773449218218,"y":0},{"x":1773449223218,"y":3},{"x":1773449228221,"y":0},{"x":1773449233217,"y":0},{"x":1773449238216,"y":42},{"x":1773449243217,"y":336},{"x":1773449248218,"y":670},{"x":1773449253217,"y":664},{"x":1773449258217,"y":437},{"x":1773449263216,"y":0},{"x":1773449268218,"y":0},{"x":1773449273216,"y":0},{"x":1773449278217,"y":0},{"x":1773449283216,"y":0},{"x":1773449288218,"y":0},{"x":1773449293216,"y":0},{"x":1773449298216,"y":0},{"x":1773449303217,"y":0},{"x":1773449308216,"y":0},{"x":1773449313217,"y":0},{"x":1773449318215,"y":0},{"x":1773449323217,"y":3},{"x":1773449328217,"y":1},{"x":1773449333218,"y":1},{"x":1773449338218,"y":2},{"x":1773449343216,"y":2},{"x":1773449348218,"y":8},{"x":1773449353217,"y":0},{"x":1773449358216,"y":0},{"x":1773449363217,"y":0},{"x":1773449368216,"y":0},{"x":1773449373218,"y":0},{"x":1773449378215,"y":0},{"x":1773449383217,"y":0},{"x":1773449388217,"y":0},{"x":1773449393220,"y":0},{"x":1773449398217,"y":0},{"x":1773449403218,"y":0},{"x":1773449408220,"y":0},{"x":1773449413216,"y":0},{"x":1773449418219,"y":0},{"x":1773449423217,"y":0},{"x":1773449428217,"y":0},{"x":1773449433217,"y":0},{"x":1773449438218,"y":0},{"x":1773449443218,"y":0},{"x":1773449448219,"y":0},{"x":1773449453219,"y":0},{"x":1773449458219,"y":0},{"x":1773449463216,"y":0},{"x":1773449468216,"y":0},{"x":1773449473218,"y":0},{"x":1773449478219,"y":0},{"x":1773449483220,"y":0},{"x":1773449488215,"y":0},{"x":1773449493217,"y":0},{"x":1773449498218,"y":0},{"x":1773449503231,"y":0},{"x":1773449508217,"y":0},{"x":1773449513218,"y":0},{"x":1773449518217,"y":0},{"x":1773449523218,"y":0},{"x":1773449528217,"y":0},{"x":1773449533218,"y":0},{"x":1773449538217,"y":0},{"x":1773449543218,"y":0},{"x":1773449548216,"y":0},{"x":1773449553217,"y":0},{"x":1773449558220,"y":106},{"x":1773449563217,"y":0},{"x":1773449568220,"y":0},{"x":1773449573220,"y":0},{"x":1773449578217,"y":3},{"x":1773449583218,"y":81},{"x":1773449588216,"y":1},{"x":1773449593217,"y":137},{"x":1773449598219,"y":0},{"x":1773449603218,"y":0},{"x":1773449608217,"y":0},{"x":1773449613217,"y":3},{"x":1773449618218,"y":0},{"x":1773449623217,"y":151},{"x":1773449628217,"y":0},{"x":1773449633218,"y":0},{"x":1773449638217,"y":0},{"x":1773449643216,"y":0},{"x":1773449648218,"y":0},{"x":1773449653216,"y":0},{"x":1773449658219,"y":0},{"x":1773449663217,"y":0},{"x":1773449668219,"y":3},{"x":1773449673218,"y":3},{"x":1773449678217,"y":0},{"x":1773449683219,"y":0},{"x":1773449688217,"y":0},{"x":1773449693218,"y":0},{"x":1773449698218,"y":0},{"x":1773449703218,"y":0},{"x":1773449708217,"y":0},{"x":1773449713218,"y":1},{"x":1773449718217,"y":0},{"x":1773449723217,"y":0},{"x":1773449728218,"y":0},{"x":1773449733217,"y":0},{"x":1773449738218,"y":0},{"x":1773449743218,"y":0},{"x":1773449748218,"y":0},{"x":1773449753218,"y":0},{"x":1773449758218,"y":0},{"x":1773449763219,"y":0},{"x":1773449768217,"y":0},{"x":1773449773217,"y":0},{"x":1773449778218,"y":0},{"x":1773449783219,"y":0},{"x":1773449788218,"y":0},{"x":1773449793217,"y":0},{"x":1773449798219,"y":0},{"x":1773449803219,"y":0},{"x":1773449808217,"y":0},{"x":1773449813222,"y":0},{"x":1773449818220,"y":0},{"x":1773449823221,"y":0},{"x":1773449828219,"y":0},{"x":1773449833224,"y":0},{"x":1773449838223,"y":0},{"x":1773449843218,"y":0},{"x":1773449848221,"y":0},{"x":1773449853221,"y":0},{"x":1773449858228,"y":0},{"x":1773449863228,"y":0},{"x":1773449868218,"y":0},{"x":1773449873220,"y":0},{"x"
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Memory Usage (MB)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"Used","color":"#377eb899","points":[{"x":1773449138220,"y":3114.4375},{"x":1773449143233,"y":3074.625},{"x":1773449148216,"y":3041.828125},{"x":1773449153216,"y":3039.59375},{"x":1773449158218,"y":2949.828125},{"x":1773449163218,"y":3008.1875},{"x":1773449168216,"y":2972.3125},{"x":1773449173217,"y":2973.4375},{"x":1773449178223,"y":2849.015625},{"x":1773449183216,"y":2825.953125},{"x":1773449188218,"y":2855.734375},{"x":1773449193217,"y":2833},{"x":1773449198216,"y":2859.765625},{"x":1773449203220,"y":2645.921875},{"x":1773449208218,"y":2696.453125},{"x":1773449213219,"y":2954.609375},{"x":1773449218218,"y":2927.625},{"x":1773449223218,"y":1443.765625},{"x":1773449228221,"y":1536.546875},{"x":1773449233217,"y":1680.90625},{"x":1773449238216,"y":1848.984375},{"x":1773449243217,"y":1839.640625},{"x":1773449248218,"y":1849.1875},{"x":1773449253217,"y":1852.828125},{"x":1773449258217,"y":1847.25},{"x":1773449263216,"y":1827.140625},{"x":1773449268218,"y":1837.6875},{"x":1773449273216,"y":1889.71875},{"x":1773449278217,"y":1897.3125},{"x":1773449283216,"y":1903.125},{"x":1773449288218,"y":1905.625},{"x":1773449293216,"y":1908.59375},{"x":1773449298216,"y":1879.4375},{"x":1773449303217,"y":1887.671875},{"x":1773449308216,"y":1748.09375},{"x":1773449313217,"y":1867.40625},{"x":1773449318215,"y":1930.21875},{"x":1773449323217,"y":1993.453125},{"x":1773449328217,"y":2137.078125},{"x":1773449333218,"y":2204.203125},{"x":1773449338218,"y":2312.859375},{"x":1773449343216,"y":2320.484375},{"x":1773449348218,"y":2526.03125},{"x":1773449353217,"y":2514.359375},{"x":1773449358216,"y":2483.609375},{"x":1773449363217,"y":2525.5},{"x":1773449368216,"y":2521.671875},{"x":1773449373218,"y":2546.953125},{"x":1773449378215,"y":2554.71875},{"x":1773449383217,"y":2569.953125},{"x":1773449388217,"y":2592.09375},{"x":1773449393220,"y":2593.734375},{"x":1773449398217,"y":2691},{"x":1773449403218,"y":2696.25},{"x":1773449408220,"y":2672.3125},{"x":1773449413216,"y":2684.453125},{"x":1773449418219,"y":2670.1875},{"x":1773449423217,"y":2692.09375},{"x":1773449428217,"y":2697.6875},{"x":1773449433217,"y":2780.703125},{"x":1773449438218,"y":2783.828125},{"x":1773449443218,"y":2804.765625},{"x":1773449448219,"y":2804.78125},{"x":1773449453219,"y":2805.171875},{"x":1773449458219,"y":2818.296875},{"x":1773449463216,"y":2823},{"x":1773449468216,"y":2827.03125},{"x":1773449473218,"y":2831.09375},{"x":1773449478219,"y":2853.0625},{"x":1773449483220,"y":2805.015625},{"x":1773449488215,"y":2738.390625},{"x":1773449493217,"y":2739.3125},{"x":1773449498218,"y":2379.59375},{"x":1773449503231,"y":2435.3125},{"x":1773449508217,"y":2444.625},{"x":1773449513218,"y":2467.453125},{"x":1773449518217,"y":2485.3125},{"x":1773449523218,"y":2477.5625},{"x":1773449528217,"y":2457.5625},{"x":1773449533218,"y":2456.546875},{"x":1773449538217,"y":2460.5},{"x":1773449543218,"y":2455.34375},{"x":1773449548216,"y":2401.375},{"x":1773449553217,"y":2035.859375},{"x":1773449558220,"y":2132.8125},{"x":1773449563217,"y":2289.703125},{"x":1773449568220,"y":2338.53125},{"x":1773449573220,"y":2549.6875},{"x":1773449578217,"y":2893.015625},{"x":1773449583218,"y":2911.90625},{"x":1773449588216,"y":2941.421875},{"x":1773449593217,"y":2930.953125},{"x":1773449598219,"y":2822.375},{"x":1773449603218,"y":2838.234375},{"x":1773449608217,"y":2779.59375},{"x":1773449613217,"y":2889.921875},{"x":1773449618218,"y":2712.1875},{"x":1773449623217,"y":2747.4375},{"x":1773449628217,"y":2756.671875},{"x":1773449633218,"y":2802.65625},{"x":1773449638217,"y":2927.09375},{"x":1773449643216,"y":2896.546875},{"x":1773449648218,"y":2439.3125},{"x":1773449653216,"y":2873.3125},{"x":1773449658219,"y":2575.6875},{"x":1773449663217,"y":2828.03125},{"x":1773449668219,"y":2346.125},{"x":1773449673218,"y":2536.171875},{"x":1773449678217,"y":2820.609375},{"x":1773449683219,"y":2430.03125},{"x":1773449688217,"y":2694.484375},{"x":177
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"CPU Load (%)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"User Load","color":"#e41a1c99","points":[{"x":1773449138220,"y":26.850966645421714},{"x":1773449143233,"y":26.247569669475045},{"x":1773449148216,"y":31.702274293590627},{"x":1773449153216,"y":33.93213572854291},{"x":1773449158218,"y":42.74193548387097},{"x":1773449163218,"y":22.259358288770052},{"x":1773449168216,"y":20.17426273458445},{"x":1773449173217,"y":23.584277148567622},{"x":1773449178223,"y":36.07214428857716},{"x":1773449183216,"y":26.101468624833114},{"x":1773449188218,"y":34.966442953020135},{"x":1773449193217,"y":32.061579651941095},{"x":1773449198216,"y":24.732620320855613},{"x":1773449203220,"y":17.089452603471294},{"x":1773449208218,"y":24.664879356568363},{"x":1773449213219,"y":22.044088176352705},{"x":1773449218218,"y":34.79707252162342},{"x":1773449223218,"y":16.387959866220736},{"x":1773449228221,"y":26.150767178118745},{"x":1773449233217,"y":15.281501340482572},{"x":1773449238216,"y":34.75650433622415},{"x":1773449243217,"y":26.273458445040216},{"x":1773449248218,"y":27.655310621242485},{"x":1773449253217,"y":25.198412698412696},{"x":1773449258217,"y":20.56451612903226},{"x":1773449263216,"y":18.39080459770115},{"x":1773449268218,"y":17.780748663101605},{"x":1773449273216,"y":16.52173913043478},{"x":1773449278217,"y":15.20428667113195},{"x":1773449283216,"y":17.271505376344088},{"x":1773449288218,"y":12.877263581488934},{"x":1773449293216,"y":16.275954454119223},{"x":1773449298216,"y":16.120401337792643},{"x":1773449303217,"y":14.055144586415603},{"x":1773449308216,"y":9.249329758713138},{"x":1773449313217,"y":37.77335984095427},{"x":1773449318215,"y":36.884693189480785},{"x":1773449323217,"y":18.891855807743656},{"x":1773449328217,"y":32.82188125416944},{"x":1773449333218,"y":47.63491005996003},{"x":1773449338218,"y":49.198931909212284},{"x":1773449343216,"y":60.60200668896321},{"x":1773449348218,"y":41.53333333333333},{"x":1773449353217,"y":65.26386105544421},{"x":1773449358216,"y":52.5965379494008},{"x":1773449363217,"y":59.45223780895124},{"x":1773449368216,"y":62.4},{"x":1773449373218,"y":37.57535164099129},{"x":1773449378215,"y":18.888144675150702},{"x":1773449383217,"y":36.786188579017264},{"x":1773449388217,"y":57.91583166332666},{"x":1773449393220,"y":38.86666666666667},{"x":1773449398217,"y":36.223118279569896},{"x":1773449403218,"y":9.151636606546425},{"x":1773449408220,"y":9.225589225589225},{"x":1773449413216,"y":8.640321500334897},{"x":1773449418219,"y":10.073875083948959},{"x":1773449423217,"y":10.344827586206897},{"x":1773449428217,"y":10.651289009497965},{"x":1773449433217,"y":15.95460614152203},{"x":1773449438218,"y":15.013404825737265},{"x":1773449443218,"y":19.517102615694164},{"x":1773449448219,"y":13.253012048192772},{"x":1773449453219,"y":11.096256684491978},{"x":1773449458219,"y":10.894418291862811},{"x":1773449463216,"y":12.877263581488934},{"x":1773449468216,"y":6.31296171927468},{"x":1773449473218,"y":10.314802411252511},{"x":1773449478219,"y":8.04289544235925},{"x":1773449483220,"y":11.96236559139785},{"x":1773449488215,"y":11.721366376423308},{"x":1773449493217,"y":8.92018779342723},{"x":1773449498218,"y":10.312707917498336},{"x":1773449503231,"y":21.04208416833667},{"x":1773449508217,"y":9.404600811907985},{"x":1773449513218,"y":7.697456492637215},{"x":1773449518217,"y":14.650537634408604},{"x":1773449523218,"y":7.919463087248323},{"x":1773449528217,"y":8.969210174029453},{"x":1773449533218,"y":11.484217595701814},{"x":1773449538217,"y":7.914151576123407},{"x":1773449543218,"y":7.39247311827957},{"x":1773449548216,"y":11.77257525083612},{"x":1773449553217,"y":12.868632707774799},{"x":1773449558220,"y":20.1199200532978},{"x":1773449563217,"y":20.321931589537222},{"x":1773449568220,"y":19.7979797979798},{"x":1773449573220,"y":38.53333333333334},{"x":1773449578217,"y":45.97471723220226},{"x":1773449583218,"y":35.518394648829435},{"x":1773449588216,"y":60.120643431635386},{"x":1773449593217,"
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
Process completed with exit code 1.
macOS-latest (auto)
R CMD check found ERRORs
ubuntu-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2, conda-incubator/setup-miniconda@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
ubuntu-latest (auto)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
macOS-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2, conda-incubator/setup-miniconda@v3, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (auto)
Could not identify any conda_env matching existing conda environments.
macOS-latest (auto)
Could not identify any conda_env matching existing conda environments.
macOS-latest (auto)
dependencies ‘BiocVersion’, ‘BiocStyle’ are not available
macOS-latest (auto)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (auto)
harfbuzz 12.3.2 is already installed and up-to-date. To reinstall 12.3.2, run: brew reinstall harfbuzz
macOS-latest (auto)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.

Artifacts

Produced during runtime
Name Size Digest
Linux-biocversion-devel-r-auto-results
1.54 MB
sha256:d61382c077b2ee4da8e1089fbc96ce3a5b0a516e6df8cc6a16490011645b7101
macOS-biocversion-release-r-auto-results
1.56 MB
sha256:4b470309f7aa27e03e72b44d057d53af2eb16bd758e94c51f05f2340c53d1f86