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annotatecontig.yml
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191 lines (191 loc) · 6.25 KB
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name: AnnotateContig
channels:
- conda-forge
- nodefaults
- default
- bioconda
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- amply=0.1.6=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- argparse-dataclass=2.0.0=pyhd8ed1ab_0
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=24.2.0=pyh71513ae_0
- blast=2.16.0=hc155240_2
- brotli-python=1.1.0=py312h2ec8cdc_2
- bzip2=1.0.8=h4bc722e_7
- c-ares=1.33.1=heb4867d_0
- ca-certificates=2024.8.30=hbcca054_0
- certifi=2024.8.30=pyhd8ed1ab_0
- cffi=1.17.1=py312h06ac9bb_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- coin-or-cbc=2.10.12=h8b142ea_1
- coin-or-cgl=0.60.7=h516709c_0
- coin-or-clp=1.17.8=h1ee7a9c_0
- coin-or-osi=0.108.10=haf5fa05_0
- coin-or-utils=2.11.11=hee58242_0
- coincbc=2.10.12=1_metapackage
- colorama=0.4.6=pyhd8ed1ab_0
- conda-inject=1.3.2=pyhd8ed1ab_0
- configargparse=1.7=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- curl=8.8.0=he654da7_1
- datrie=0.8.2=py312h66e93f0_8
- docutils=0.21.2=pyhd8ed1ab_0
- dpath=2.2.0=pyha770c72_0
- eido=0.2.2=pyhd8ed1ab_0
- entrez-direct=22.4=he881be0_0
- exceptiongroup=1.2.2=pyhd8ed1ab_0
- gettext=0.22.5=he02047a_3
- gettext-tools=0.22.5=he02047a_3
- gitdb=4.0.11=pyhd8ed1ab_0
- gitpython=3.1.43=pyhd8ed1ab_0
- h2=4.1.0=pyhd8ed1ab_0
- hpack=4.0.0=pyh9f0ad1d_0
- htslib=1.20=h5efdd21_2
- humanfriendly=10.0=pyhd8ed1ab_6
- hyperframe=6.0.1=pyhd8ed1ab_0
- idna=3.8=pyhd8ed1ab_0
- immutables=0.20=py312h98912ed_1
- importlib_resources=6.4.5=pyhd8ed1ab_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- jinja2=3.1.4=pyhd8ed1ab_0
- jsonschema=4.23.0=pyhd8ed1ab_0
- jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
- jupyter_core=5.7.2=py312h7900ff3_0
- k8=0.2.5=hdcf5f25_4
- keyutils=1.6.1=h166bdaf_0
- krb5=1.21.3=h659f571_0
- ld_impl_linux-64=2.40=hf3520f5_7
- libasprintf=0.22.5=he8f35ee_3
- libasprintf-devel=0.22.5=he8f35ee_3
- libblas=3.9.0=23_linux64_openblas
- libcblas=3.9.0=23_linux64_openblas
- libcurl=8.8.0=hca28451_1
- libdeflate=1.21=h4bc722e_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libexpat=2.6.3=h5888daf_0
- libffi=3.4.2=h7f98852_5
- libgcc=14.1.0=h77fa898_1
- libgcc-ng=14.1.0=h69a702a_1
- libgettextpo=0.22.5=he02047a_3
- libgettextpo-devel=0.22.5=he02047a_3
- libgfortran=14.1.0=h69a702a_1
- libgfortran-ng=14.1.0=h69a702a_1
- libgfortran5=14.1.0=hc5f4f2c_1
- libgomp=14.1.0=h77fa898_1
- libidn2=2.3.7=hd590300_0
- liblapack=3.9.0=23_linux64_openblas
- liblapacke=3.9.0=23_linux64_openblas
- libnghttp2=1.58.0=h47da74e_1
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.27=pthreads_hac2b453_1
- libsqlite=3.46.0=hde9e2c9_0
- libssh2=1.11.0=h0841786_0
- libstdcxx=14.1.0=hc0a3c3a_1
- libstdcxx-ng=14.1.0=h4852527_1
- libunistring=0.9.10=h7f98852_0
- libuuid=2.38.1=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libzlib=1.2.13=h4ab18f5_6
- logmuse=0.2.6=pyh8c360ce_0
- markdown-it-py=3.0.0=pyhd8ed1ab_0
- markupsafe=2.1.5=py312h66e93f0_1
- mdurl=0.1.2=pyhd8ed1ab_0
- minimap2=2.17=h5bf99c6_4
- nbformat=5.10.4=pyhd8ed1ab_0
- ncbi-vdb=3.1.1=h4ac6f70_2
- ncurses=6.5=he02047a_1
- numpy=2.1.1=py312h58c1407_0
- openssl=3.3.2=hb9d3cd8_0
- packaging=24.1=pyhd8ed1ab_0
- pandas=2.2.2=py312h1d6d2e6_1
- peppy=0.40.6=pyhd8ed1ab_0
- perl=5.32.1=7_hd590300_perl5
- perl-archive-tar=2.40=pl5321hdfd78af_0
- perl-carp=1.50=pl5321hd8ed1ab_0
- perl-common-sense=3.75=pl5321hd8ed1ab_0
- perl-compress-raw-bzip2=2.201=pl5321h166bdaf_0
- perl-compress-raw-zlib=2.202=pl5321h166bdaf_0
- perl-encode=3.21=pl5321hd590300_0
- perl-exporter=5.74=pl5321hd8ed1ab_0
- perl-exporter-tiny=1.002002=pl5321hd8ed1ab_0
- perl-extutils-makemaker=7.70=pl5321hd8ed1ab_0
- perl-io-compress=2.201=pl5321hdbdd923_2
- perl-io-zlib=1.14=pl5321hdfd78af_0
- perl-json=4.10=pl5321hdfd78af_1
- perl-json-xs=4.03=pl5321h4ac6f70_3
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321h031d066_2
- perl-parent=0.241=pl5321hd8ed1ab_0
- perl-pathtools=3.75=pl5321h166bdaf_0
- perl-scalar-list-utils=1.63=pl5321h166bdaf_0
- perl-storable=3.15=pl5321hb9d3cd8_0
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- pip=24.2=pyh8b19718_1
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
- plac=1.4.3=pyhd8ed1ab_0
- platformdirs=4.3.2=pyhd8ed1ab_0
- pluggy=1.5.0=pyhd8ed1ab_0
- psutil=6.0.0=py312h66e93f0_1
- pulp=2.8.0=py312h7900ff3_0
- pycparser=2.22=pyhd8ed1ab_0
- pygments=2.18.0=pyhd8ed1ab_0
- pyparsing=3.1.4=pyhd8ed1ab_0
- pysocks=1.7.1=pyha2e5f31_6
- pytest=8.3.3=pyhd8ed1ab_0
- python=3.12.3=hab00c5b_0_cpython
- python-dateutil=2.9.0=pyhd8ed1ab_0
- python-fastjsonschema=2.20.0=pyhd8ed1ab_0
- python-tzdata=2024.1=pyhd8ed1ab_0
- python_abi=3.12=5_cp312
- pytz=2024.2=pyhd8ed1ab_0
- pyyaml=6.0.2=py312h66e93f0_1
- readline=8.2=h8228510_1
- referencing=0.35.1=pyhd8ed1ab_0
- requests=2.32.3=pyhd8ed1ab_0
- reretry=0.11.8=pyhd8ed1ab_0
- rich=13.7.1=pyhd8ed1ab_0
- rpds-py=0.20.0=py312h12e396e_1
- rpsbproc=0.5.0=h6a68c12_0
- setuptools=73.0.1=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- slack-sdk=3.32.0=pyha770c72_0
- slack_sdk=3.32.0=hd8ed1ab_0
- smart_open=7.0.4=pyhd8ed1ab_0
- smmap=5.0.0=pyhd8ed1ab_0
- snakemake=8.20.3=hdfd78af_0
- snakemake-interface-common=1.17.3=pyhdfd78af_0
- snakemake-interface-executor-plugins=9.2.0=pyhdfd78af_0
- snakemake-interface-report-plugins=1.0.0=pyhdfd78af_0
- snakemake-interface-storage-plugins=3.3.0=pyhdfd78af_0
- snakemake-minimal=8.20.3=pyhdfd78af_0
- star=2.7.11b=h43eeafb_2
- tabulate=0.9.0=pyhd8ed1ab_1
- throttler=1.2.2=pyhd8ed1ab_0
- tk=8.6.13=noxft_h4845f30_101
- tomli=2.0.1=pyhd8ed1ab_0
- toposort=1.10=pyhd8ed1ab_0
- traitlets=5.14.3=pyhd8ed1ab_0
- typing_extensions=4.12.2=pyha770c72_0
- tzdata=2024a=h8827d51_1
- ubiquerg=0.8.0=pyhd8ed1ab_0
- urllib3=2.2.2=pyhd8ed1ab_1
- veracitools=0.1.3=py_0
- wget=1.21.4=hda4d442_0
- wheel=0.44.0=pyhd8ed1ab_0
- wrapt=1.16.0=py312h66e93f0_1
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yte=1.5.4=pyha770c72_0
- zipp=3.20.1=pyhd8ed1ab_0
- zlib=1.2.13=h4ab18f5_6
- zstandard=0.23.0=py312hef9b889_1
- zstd=1.5.6=ha6fb4c9_0
- pip:
- biopython==1.84
- intervaltree==3.1.0
- pysam==0.22.1
- sortedcontainers==2.4.0