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update Makefile to change reasoner from ELK to HERMIT for OWL file generation
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@@ -76,7 +76,7 @@ $(RAW_DUMPS_DIR)/construct_%.owl: $(RAW_DUMPS_DIR)/%.ttl
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# Generates an OWL file from multiple TTL files, infers annotations and relations,
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# reduces the ontology, annotates it, and saves it to disk.
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$(RAW_DUMPS_DIR)/construct_all.owl: $(RAW_DUMPS_DIR)/all.ttl
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$(call log, $@, $(ROBOT) merge -i $< reason --reasoner ELK --axiom-generators "SubClass EquivalentClass ClassAssertion" --exclude-tautologies structural relax reduce --reasoner ELK annotate --ontology-iri "http://virtualflybrain.org/data/VFB/OWL/raw/all.owl" convert -f owl -o $@ $(STDOUT_FILTER))
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$(call log, $@, $(ROBOT) merge -i $< reason --reasoner HERMIT --axiom-generators "SubClass EquivalentClass ClassAssertion" --exclude-tautologies structural relax reduce --reasoner HERMIT annotate --ontology-iri "http://virtualflybrain.org/data/VFB/OWL/raw/all.owl" convert -f owl -o $@ $(STDOUT_FILTER))
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# Infers annotations and relations for the virtual fly brain ontology using the ROBOT inference engine.
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$(RAW_DUMPS_DIR)/inferred_annotation.owl: $(FINAL_DUMPS_DIR)/owlery.owl $(RAW_DUMPS_DIR)/vfb-config.yaml

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