docker-compose.desktop.yml

# ── DESeq2 Explorer — Desktop launcher ────────────────────────────────────────
# Pulls the pre-built image from Docker Hub.
# Run via launch.sh (macOS/Linux) or launch.bat (Windows).
# To build locally instead: docker compose -f docker-compose.desktop.yml up -d --build

services:
  app:
    image: bixbeta/deseq2-explorer:latest
    container_name: deseq2-explorer
    ports:
      - "3000:80"
    volumes:
      - deseq2_data:/data
    env_file:
      - path: .env
        required: false          # desktop users don't need SMTP
    environment:
      - APP_URL=http://localhost:3000
      # Redirect R data paths into the named volume at /data.
      # The R defaults resolve to /app/data (dirname of workdir), which is the
      # container writable layer and is lost on `docker compose down`.
      - DB_PATH=/data/sessions.db
      - UPLOAD_DIR=/data/uploads
      - RESULTS_DIR=/data/results
    restart: unless-stopped
    healthcheck:
      test: ["CMD", "curl", "-sf", "http://localhost/api/ping"]
      interval: 15s
      timeout: 5s
      start_period: 90s
      retries: 8

volumes:
  deseq2_data:
    name: deseq2_data