meta-pipe/.env.example at main · htlin222/meta-pipe · GitHub

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# Meta-Analysis Pipeline Environment Variables
# See docs/API_SETUP.md for detailed setup instructions

# === PubMed (Required) ===
# Get from: https://www.ncbi.nlm.nih.gov/account/
PUBMED_API_KEY=

# === Elsevier: Scopus & Embase (Same API key) ===
# Get from: https://dev.elsevier.com/
SCOPUS_API_KEY=
SCOPUS_INST_TOKEN=
EMBASE_API_KEY=
EMBASE_INST_TOKEN=
EMBASE_AUTH_TOKEN=

# === Cochrane (Usually manual export instead) ===
COCHRANE_OAUTH_TOKEN=
COCHRANE_USERNAME=
COCHRANE_PASSWORD=

# === Zotero ===
# Get from: https://www.zotero.org/settings/keys
# API Key: 24 alphanumeric characters
# Library ID: Found on settings/keys page ("Your userID for API calls is XXX")
# Collection Key: 8 chars from URL zotero.org/user/collections/XXXXXXXX
ZOTERO_API_KEY=
ZOTERO_LIBRARY_TYPE=user
ZOTERO_LIBRARY_ID=
ZOTERO_COLLECTION_KEY=

# === Utilities ===
MESH_LOOKUP_URL=
UNPAYWALL_EMAIL=
RESULTS_MIN_WORDS=

# === LLM API (Optional: for assisted extraction) ===
LLM_API_BASE=
LLM_API_KEY=
LLM_MODEL=
LLM_HEADERS_JSON=