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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -28,7 +28,7 @@ echo "Sorting done in $(($ENDTIME - $STARTTIME)) seconds"
2828# rm $fileIn.sorted.tmp
2929echo " Merging contiguous targets"
3030# python remove_contiguous_samples_cfd.py $fileIn.sorted $fileOut $thresh $chrom $position $total $true_guide $snp_info $cfd
31- python remove_contiguous_samples .py $fileIn $fileOut $thresh $chrom $position $total $true_guide $snp_info $cfd $sort_pivot $sorting_criteria_scoring $sorting_criteria
31+ python remove_contiguous_samples_cfd .py $fileIn $fileOut $thresh $chrom $position $total $true_guide $snp_info $cfd $sort_pivot $sorting_criteria_scoring $sorting_criteria
3232# python remove_contiguous_samples_cfd_new.py $fileIn $fileOut $thresh $chrom $position $total $true_guide $snp_info $cfd $sort_pivot $sorting_criteria_scoring $sorting_criteria || {
3333# echo "CRISPRme ERROR: contigous SNP removal failed (script: ${0} line $((LINENO-1)))" >&2
3434# exit 1
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