Hello,
This is a question for the transannot tool but the question is actually regarding mmseqs that transannot uses. So posting the same here. I have created an issue in transannot as well.
I am unable to install the Pfam database using the method outlined in transannot since our systems are not setup for using the FTP protocol. I am not sure if the author is able to provide an https alternative. But, since this tool uses mmseqs, I was wondering whether the following commands will build the Pfam database in the format used by transannot
wget https://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.full.gz
mmseqs createdb Pfam-A.full.gz PFAMDBFULL --dbtype 1 --threads 32
Sorry to post here but since these tools come from the same lab, I am assuming you'll are in sync with each others projects.
Best Regards
Abhijit
Hello,
This is a question for the
transannottool but the question is actually regardingmmseqsthattransannotuses. So posting the same here. I have created an issue intransannotas well.I am unable to install the Pfam database using the method outlined in
transannotsince our systems are not setup for using the FTP protocol. I am not sure if the author is able to provide an https alternative. But, since this tool uses mmseqs, I was wondering whether the following commands will build the Pfam database in the format used bytransannotSorry to post here but since these tools come from the same lab, I am assuming you'll are in sync with each others projects.
Best Regards
Abhijit