Fixes due to new Python version

Author: v--

code/commands/__init__.py

@@ -0,0 +1 @@
+from . import xsdata_hack

code/commands/bibtools/sources/arxiv/model.py

@@ -51,7 +51,7 @@ class ArxivEntry:
 
     primary_category: ArxivCategory = field(metadata=dict(type='Element', required=True, namespace=ARXIV_NAMESPACE))
     comment: str | None =             field(metadata=dict(type='Element', namespace=ARXIV_NAMESPACE), default=None)
-    affiliation: str | None =        field(metadata=dict(type='Element', namespace=ARXIV_NAMESPACE), default=None)
+    affiliation: str | None =         field(metadata=dict(type='Element', namespace=ARXIV_NAMESPACE), default=None)
     journal_ref: str | None =         field(metadata=dict(type='Element', namespace=ARXIV_NAMESPACE), default=None)
     doi: str | None =                 field(metadata=dict(type='Element', namespace=ARXIV_NAMESPACE), default=None)
 

code/commands/bibtools/sources/common/keywords.py

@@ -1,3 +1,4 @@
+import warnings
 from collections.abc import Sequence
 
 import many_stop_words
@@ -16,7 +17,9 @@ def get_stop_words(language: str) -> Sequence[str]:
         lang_code = 'kr'
 
     if lang_code in many_stop_words.available_languages:
-        return many_stop_words.get_stop_words(lang_code)
+        with warnings.catch_warnings():
+            warnings.simplefilter('ignore')
+            return many_stop_words.get_stop_words(lang_code)
 
     if language in stop_words.AVAILABLE_LANGUAGES:
         return stop_words.get_stop_words(language)

code/commands/xsdata_hack.py

@@ -0,0 +1,24 @@
+from typing import Any, get_type_hints
+
+from xsdata.exceptions import XmlContextError
+from xsdata.formats.dataclass.models.builders import XmlMetaBuilder
+
+
+# TODO: Remove when this gets fixed upstream
+def find_declared_class_patched(cls: type, clazz: type, name: str) -> Any:  # noqa: ARG001,ANN401
+    """Find the user class that matches the name.
+
+    Todo: Honestly I have no idea why we needed this.
+    """
+    for base in clazz.__mro__:
+        # ann = base.__dict__.get("__annotations__")
+        ann = get_type_hints(base)  # Only this line is modified
+
+        if ann and name in ann:
+            return base
+
+    raise XmlContextError(f'Failed to detect the declared class for field {name}')
+
+
+
+setattr(XmlMetaBuilder, 'find_declared_class', classmethod(find_declared_class_patched))  # noqa: B010

code/notebook/bibtex/entry.py

@@ -1,5 +1,5 @@
 from collections.abc import Collection, Iterable, Mapping, Sequence
-from dataclasses import dataclass, field, asdict
+from dataclasses import asdict, dataclass, field
 from typing import Annotated, Literal, get_args, get_type_hints
 
 from ..support.iteration import string_accumulator

code/notebook/math/logic/derivation/minimal_implicational_logic.py

@@ -34,7 +34,7 @@ def introduce_conclusion_hypothesis(system: AxiomaticDerivationSystem, derivatio
     if len(derivation.payload) == 0:
         return derivation
 
-    *rest, conclusion = derivation.payload
+    *_rest, conclusion = derivation.payload
 
     goal = ConnectiveFormula(BinaryConnective.CONDITIONAL, hypothesis, conclusion)
 

code/ruff.toml

@@ -35,6 +35,7 @@ ignore = [
   "EM",
   "ERA001",
   "FA100", "FA102",
+  "FIX",
   "FURB129",
   "G004",
   "NPY",
@@ -46,11 +47,12 @@ ignore = [
   "PTH123",
   "PYI025", "PYI041",
   "RET504",
-  "TC001",
   "RUF001", "RUF003", "RUF018",
   "S101", "S105", "S311", "S314", "S324", "S310", "S603",
   "SIM108", "SIM118", "SIM910",
+  "TC001",
   "TC002", "TC003", "TC006",
+  "TD",
   "TID252",
   "TRY003",
   "UP031",

figures/ex__def__logistic_map__orbits.py

@@ -3,7 +3,7 @@
 import tempfile
 import os
 import shutil
-from concurrent.futures import ProcessPoolExecutor
+from concurrent.futures import ThreadPoolExecutor
 from textwrap import dedent
 
 import numpy as np
@@ -46,7 +46,7 @@ def fill_pixels(j: int):
     return column
 
 
-with ProcessPoolExecutor() as executor:
+with ThreadPoolExecutor() as executor:
     columns = list(executor.map(fill_pixels, list(range(a_resolution))))