Repositories list

• SelectZyme-app

  Public
  Repository for the SelectZyme web app to visualize prebuild analyses to accompany the publication.

  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 12, 2026May 12, 2026

• CRIMSy

  Public
  Cloud Resource and Information Management System

  Java

  •

  Apache License 2.0

  •44 forks•22 stars•4848 issues•44 pull requests•Updated May 12, 2026May 12, 2026

• MetFamily

  Public
  Understanding metabolism is fundamental in biomedical and plant research and the identification and quantification of thousands of metabolites by mass spectrome…

  annotationanalysismass-spectrometry+ 2

  annotationanalysismass-spectrometrymetabolitescomprehensive-metabolomics-studies

  R

  •

  GNU General Public License v2.0

  •88 forks•1212 stars•1616 issues•22 pull requests•Updated May 11, 2026May 11, 2026

• Exploitable

  Public
  A demo project for highlighting some security issues

  Java

  •

  MIT License

  •00 forks•00 stars•00 issues•11 pull request•Updated May 6, 2026May 6, 2026

• fasta-search-service

  Public
  Reusable Docker container for sequence library search and alignment in relational databases with the FASTA program package

  dockerrestfasta+ 1

  dockerrestfastabiological-sequences

  Java

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•11 pull request•Updated May 6, 2026May 6, 2026

• GoldenMutagenesisWeb

  Public
  This repository is used for the development of the GoldenMutagenesis web application

  R

  •

  GNU Affero General Public License v3.0

  •11 fork•00 stars•99 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• MolPaintJS

  Public
  Pure HTML5 / JavaScript molecular editor / viewer

  JavaScript

  •

  Apache License 2.0

  •33 forks•88 stars•00 issues•22 pull requests•Updated Apr 10, 2026Apr 10, 2026

• SelectZyme

  Public
  SelectZyme: Select enzymes interactively and navigate sequence space.

  Jupyter Notebook

  •

  MIT License

  •11 fork•00 stars•00 issues•22 pull requests•Updated Apr 8, 2026Apr 8, 2026

• MetFrag

  Public
  Repo hosting the MetFrag website

  HTML

  •77 forks•1010 stars•1313 issues•11 pull request•Updated Apr 6, 2026Apr 6, 2026

• MetFragRelaunched

  Public
  Relaunch of the initial MetFrag project.

  Java

  •1515 forks•1919 stars•5050 issues•1111 pull requests•Updated Mar 9, 2026Mar 9, 2026

• one-health

  Public
  An interactive knowledge base for bioactive compound discovery

  TypeScript

  •

  Apache License 2.0

  •11 fork•44 stars•00 issues•22 pull requests•Updated Mar 5, 2026Mar 5, 2026

• MetFragTraining

  Public
  Training material for MetFrag usage

  JavaScript

  •44 forks•33 stars•00 issues•00 pull requests•Updated Feb 9, 2026Feb 9, 2026

• ipb-charts-public

  Public
  Packaging of applications for Kubernetes as Helm charts or Rancher Apps

  kuberneteshelm

  kuberneteshelm

  Go Template

  •

  Apache License 2.0

  •11 fork•00 stars•11 issue•11 pull request•Updated Jan 31, 2026Jan 31, 2026

• MetFamilIE

  Public
  The MetFamily Galaxy Interactive Environment Tool for MetFamily

  BSD 3-Clause "New" or "Revised" License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 28, 2025Sep 28, 2025

• IPBSticker

  Public
  Hex Sticker for IPB, tools and Databases

  R

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 29, 2025Jul 29, 2025

• one-health-sources

  Public
  Code repository for data collection, processing and integration for the One Health Platform project

  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 5, 2024Jun 5, 2024

• FlavorMiner

  Public
  Jupyter Notebook

  •22 forks•1212 stars•00 issues•00 pull requests•Updated Jun 3, 2024Jun 3, 2024

• MolecularFaces

  Public
  Java Server Faces UI components for chemistry and biochemistry

  chemistrygeneticsbiology+ 4

  chemistrygeneticsbiologybiochemistryjsfjavaserverfaceschemical-structure

  Java

  •

  Apache License 2.0

  •22 forks•22 stars•00 issues•00 pull requests•Updated May 16, 2024May 16, 2024

• ISATab-DataSets

  Public
  ISA-Tab descriptions of DataSets created and managed at the IPB

  JavaScript

  •

  Creative Commons Zero v1.0 Universal

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 22, 2024Apr 22, 2024

• libstemmer

  Public
  mavenize snowball stemmer

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 12, 2024Apr 12, 2024

• iESTIMATE

  Public
  Identifying ESsenTIal Molecular vAriables in Terrestrial Ecology

  HTML

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 21, 2024Mar 21, 2024

• MetFamily-testthat

  Public
  to generate testthat file

  R

  •

  GNU General Public License v3.0

  •88 forks•00 stars•00 issues•00 pull requests•Updated Nov 29, 2023Nov 29, 2023

• biobyte

  Public
  Training example for Biobyte

  R

  •

  BSD 2-Clause "Simplified" License

  •00 forks•00 stars•22 issues•00 pull requests•Updated Jul 31, 2023Jul 31, 2023

• analysis_R-GECO1_CDPK-FRET

  Public
  Synchronisation analysis of R-GECO1 and CDPK-FRET in guard cells

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 26, 2023Jun 26, 2023

• CRIMSy-CI

  Public
  Combined Chemistry DataBase Cartridges

  Dockerfile

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 17, 2022May 17, 2022

• fasta-playground

  Public archive
  Test project for sequence library searching

  jsffastajavaserverfaes

  jsffastajavaserverfaes

  Java

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 24, 2021Nov 24, 2021

• Show-And-Tell_Browser-Test-Automation

  Public
  Java

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 5, 2021Nov 5, 2021

• SeqProc

  Public
  A simple example wrapper for a command line tool with graphical interface.

  Java

  •

  MIT License

  •00 forks•00 stars•00 issues•11 pull request•Updated Apr 26, 2021Apr 26, 2021

• GoldenMutagenesis

  Public
  Support for rapid design of primers for amino acid exchanges and saturation mutagenesis by Golden Gate cloning.

  primerprimer-designgoldengate

  primerprimer-designgoldengate

  R

  •

  GNU Lesser General Public License v3.0

  •33 forks•44 stars•11 issue•00 pull requests•Updated Apr 8, 2021Apr 8, 2021

• specktackle

  Public
  Fork of https://bitbucket.org/sbeisken/specktackle.git

  JavaScript

  •

  GNU Lesser General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 26, 2021Mar 26, 2021